SSj Vegeta (Android Arc) is likely equal to Future 17 IMO. And SSj Goku (Androids Arc) is <= SSj Vegeta. So, Androids Arc Goku would likely lose, let alone Yardrat Goku, who is likely weaker than even Sick SSj Goku.
I'll take Goku in this. Even if battle powers are close, he is clearly the better fighter. Might ge similar to the Kamiccolo fight overall, though I think Goku has more tricks up his sleeve.