Overall, the World Government seems to be more evil, with acts such as the Void Century's implications, Slavery/potential sex trafficking and other acts similar to real world Freemasonry. As Kyo said though, the Void Century could make the situation a lot grayer. There have also been plenty of pirates to be just as evil or ruthless as Government officials, Doflamingo being a prime example, so it's not a clear cut presentation. I think Doflamingo's dialogue about justice and morals during Marineford is not only a great speech, but also foreshadowing as to how justice could be portrayed in the last few arcs.